PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1501

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 156aa MW: 17534.1 Da PI: 4.8121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1501	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	11	33	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ +L +Hi +H Tp57577_TGAC_v2_mRNA1501 11 FPCRLCNQVFPNIQSLITHIESH 33 89******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.619	11	38	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0067	11	33	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	33	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MANNNHSNTI FPCRLCNQVF PNIQSLITHI ESHMLQENLA LLRLNNINNP HFETQIEQIP 60 NPLQAPPQQP LALPQPSQIM NNVVSHPPHV LQNVMPSAEK NVAEMTLMSP TQDYMEVSQI 120 DGTKPYIDKL DKPINSMFVN PPIVNDDTLD LELKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1501

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z6M6M0	1e-83	A0A2Z6M6M0_TRISU; Uncharacterized protein
STRING	AES61096	2e-48	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14312	3	5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1501