PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15088

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 453aa MW: 50300.4 Da PI: 6.9738

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15088	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.5e-38	119	178	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvP+G+g+r+nk+s Tp57577_TGAC_v2_mRNA15088 119 PDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHS 178 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	116	176	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-31	120	177	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	123	177	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	125	161	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MFQDPSIKLF GSDIQIHIPI NSTDSHSQIY SLPQQPIIIM FGTQLQNGIE ESSNADVGVP 60 LNEVSSKQAN AFPQEDANAF PNMYETGTSK PVTKAVHRNN EHRTAKRDTD NQEKAFKKPD 120 KVLPCPRCNS LETKFCYFNN YNVNQPRHFC KKCQRYWTAG GAIRNVPIGA GKRRNKHSPL 180 QNCEVPVTLD VVPVIHTDSN PASLNEEVPL SESLEVLNLK GHRKIEIDLS TIKEDIDEPS 240 RSSVKAAESG KMEYSENGIE HVSLTTQYNG LIPLHALHYY SAPPWQWNPC WNPTAFKPDN 300 ITSTPANMMA VEIPMTPSSY WSCMANWVGQ MEEFNGIPSP SSSVSSGTCS GNRSPTLGKH 360 CRDGSTQEED TMKPNIWVPK TIRINDPEEA AKSSIWSTLA TKSKQNKPVM KGSVFKSFEP 420 KSNASSHDLD DNQILRANPA AFSRSGSFQE SM*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MFQDPSIKLF GSDIQIHIPI NSTDSHSQIY SLPQQPIIIM FGTQLQNGIE ESSNADVGVP  60
LNEVSSKQAN AFPQEDANAF PNMYETGTSK PVTKAVHRNN EHRTAKRDTD NQEKAFKKPD  120
KVLPCPRCNS LETKFCYFNN YNVNQPRHFC KKCQRYWTAG GAIRNVPIGA GKRRNKHSPL  180
QNCEVPVTLD VVPVIHTDSN PASLNEEVPL SESLEVLNLK GHRKIEIDLS TIKEDIDEPS  240
RSSVKAAESG KMEYSENGIE HVSLTTQYNG LIPLHALHYY SAPPWQWNPC WNPTAFKPDN  300
ITSTPANMMA VEIPMTPSSY WSCMANWVGQ MEEFNGIPSP SSSVSSGTCS GNRSPTLGKH  360
CRDGSTQEED TMKPNIWVPK TIRINDPEEA AKSSIWSTLA TKSKQNKPVM KGSVFKSFEP  420
KSNASSHDLD DNQILRANPA AFSRSGSFQE SM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003628145.1	0.0	cyclic dof factor 1
TrEMBL	A0A2K3NTQ3	0.0	A0A2K3NTQ3_TRIPR; Dof zinc finger protein
STRING	AES85396	0.0	(Medicago truncatula)
STRING	AET02621	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-58	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15088