PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15106
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 74aa    MW: 8588.68 Da    PI: 5.5369
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15106genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-102065346
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                WT e+ +l+ +a    +++   +W+ Ia +++  +++ q+k+++ +
  Tp57577_TGAC_v2_mRNA15106 20 QWTREDNKLFEKALITVPKHssnRWEEIAGYVP-DKSAAQVKDHYED 65
                               6**************99999999**********.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.74E-121667IPR009057Homeodomain-like
SMARTSM007174.4E-51769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-62067IPR009057Homeodomain-like
PfamPF002492.2E-82066IPR001005SANT/Myb domain
PROSITE profilePS500907.0732167IPR017877Myb-like domain
CDDcd001671.06E-72167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MHQKTIDMAA AAARTLWPTQ WTREDNKLFE KALITVPKHS SNRWEEIAGY VPDKSAAQVK  60
DHYEDLVHDI LEIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237360.17e-19syringolide-induced protein 1-3-1A
RefseqXP_013470249.19e-19transcription factor DIVARICATA
RefseqXP_028184395.16e-19transcription factor DIVARICATA-like
TrEMBLA0A392SNG04e-42A0A392SNG0_9FABA; Transcription factor DIVARICATA-like (Fragment)
STRINGGLYMA10G42450.13e-18(Glycine max)
STRINGAES843684e-18(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-16MYB family protein