PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15108
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 479aa    MW: 50513.4 Da    PI: 8.455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-124570227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                               +++ C +++rtG+C yG+rC+F+H++
  Tp57577_TGAC_v2_mRNA15108 45 DEADCIYYLRTGFCGYGSRCRFNHPR 70
                               6799********************96 PP
2zf-CCCH33.76.4e-1191115327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++ C+++ rtG Ck+G++Ck++H++
  Tp57577_TGAC_v2_mRNA15108  91 QPVCQYYIRTGACKFGASCKYHHPR 115
                                689********************96 PP
3zf-CCCH37.73.5e-12137161327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C+++a+tG+Ck+G++CkF+H++
  Tp57577_TGAC_v2_mRNA15108 137 EKECSYYAKTGQCKFGATCKFHHPQ 161
                                679********************97 PP
4zf-CCCH35.71.5e-11302327227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++ +C+++++tG+Ck+G++C+++H++
  Tp57577_TGAC_v2_mRNA15108 302 DQQECHHYMKTGECKFGSSCRYHHPQ 327
                                5679********************97 PP
5zf-CCCH30.56.3e-10348371427
                                ---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 +C ++ + G+Ck+G+ CkF H++
  Tp57577_TGAC_v2_mRNA15108 348 QPCTHYTQRGICKFGSACKFDHPM 371
                                69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2954371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64571IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-104570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-54970IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-588115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23488116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-691116IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-891115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-593115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6136162IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4140160IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042300328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6302328IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4306327IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474344372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6347374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5348369IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7348371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MERYGRANEG SNSDPTPEWT LAGVDTSHQA GYGLVSGESY PQRPDEADCI YYLRTGFCGY  60
GSRCRFNHPR DRGAVIGAAR IAGEYPERVG QPVCQYYIRT GACKFGASCK YHHPRQAAGT  120
TAPVSLNYYG YPLRAGEKEC SYYAKTGQCK FGATCKFHHP QPAGVQMIPP SPVPQVSPLP  180
MPVPSPMYQT VQPPSGPSQQ QYGVLVARPP LLHGSFVQGP YGPMVVSPTM VPFSGWSPYQ  240
APAQSPLLPS STPLSVGPTQ IYGMTQVPSP TTAYTGHFQS SGSSTGPSGS SQKESSLPER  300
PDQQECHHYM KTGECKFGSS CRYHHPQDMG APKVNFSPIG LPLRPGAQPC THYTQRGICK  360
FGSACKFDHP MGSLSYSPSA SSLADMPVAP YPVGSSIGTL APSSSSSELR PELASGSSKE  420
SASSRMSSSM STSTASVGLT LSTVAPVSQS STQPSAQSAS SLATPSATTS STVSHTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743271e-154AC174327.15 Medicago truncatula chromosome 8 clone mth2-108e23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609623.20.0zinc finger CCCH domain-containing protein 34 isoform X2
SwissprotQ6NPN31e-147C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2K3N0490.0A0A2K3N049_TRIPR; Zinc finger CCCH domain-containing protein 58-like (Fragment)
STRINGAES918200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-121C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]