PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1519

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 226aa MW: 24397.9 Da PI: 8.4886

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1519	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84.6	1.4e-26	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C++ p++ +++q +++ +++k++G++ +l+ll+++p+++ e++++sl+yeA r+ +P yGa+g++ Tp57577_TGAC_v2_mRNA1519 4 SCNGCRVLRKGCSEGCIIKPCLewissAQAQGHATLFLAKFYGRTGLLNLLANAPNQNAEAVFKSLLYEAAGRLVNPTYGALGLF 88 6*******************9998777889************************************************* PP DUF260 81 lklqqqleqlkaelallkee 100 +++q+ +++++e +l++++ Tp57577_TGAC_v2_mRNA1519 89 WTGQWSRCEAAVESVLTRSN 108 **********99998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.85	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-22	4	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MKLSCNGCRV LRKGCSEGCI IKPCLEWISS AQAQGHATLF LAKFYGRTGL LNLLANAPNQ 60 NAEAVFKSLL YEAAGRLVNP TYGALGLFWT GQWSRCEAAV ESVLTRSNIN DVIAVDGQTS 120 SGTLIAENHV LPTNSDIRHV ARGTNVDIKE KTQFKRAGSI FKPKPRIGLA NNATLLKSIL 180 ENDIVTTVET SSMIEKELNE AAETQVNLEL TLGFNCQSSN GKKII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1519

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013470179.1	1e-117	LOB domain-containing protein 42
Swissprot	Q9ZW96	2e-50	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A2K3LWV0	1e-163	A0A2K3LWV0_TRIPR; LOB domain-containing protein
STRING	AES84556	1e-116	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	2e-46	LOB domain-containing protein 40

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1519