PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15219
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 201aa    MW: 22573.7 Da    PI: 5.9484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-151312002797
                                ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                g++++++ + ++ +   rsW+vk+ ++++ +  +l++GW+ F+++ gLk gD++vF+l+++++  ++v+vf
  Tp57577_TGAC_v2_mRNA15219 131 GLIENKD-KYVMLQIGKRSWNVKVLHCGSNNVRYLSAGWSLFASESGLKPGDVCVFELINKNDLVFKVHVF 200
                                3444444.677788899*******999999999**************************888887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-16105200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-15105199IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-15108200No hitNo description
SMARTSM010193.0E-9109198IPR003340B3 DNA binding domain
PfamPF023623.1E-12131200IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815147200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEIDYGSSSD TDDDENDNVG DSDDESVKII DEKNNSIDHS DDDESVEILD EWLKRKKNGQ  60
KSPIGSPRPH KKVRSIXXXX XXXXXXXLNW PNVPKAREVA AKFISSNPFF TIHIKPCHVA  120
DSQLGLPNLK GLIENKDKYV MLQIGKRSWN VKVLHCGSNN VRYLSAGWSL FASESGLKPG  180
DVCVFELINK NDLVFKVHVF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.13e-67B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3L3E51e-102A0A2K3L3E5_TRIPR; B3 domain-containing protein
STRINGAES707041e-66(Medicago truncatula)
STRINGAES858321e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-13related to vernalization1 1