PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15223
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 304aa    MW: 34906 Da    PI: 9.9962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15223genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-15191001197
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                                ++++rl +p+kf++++g +   s  + ++ ++g  W+v+   +k  g+++++kGWk+F ++  L++g  v+Fk+ +  s+f  +
  Tp57577_TGAC_v2_mRNA15223  19 TTLQRLKIPNKFTKSYGVS--LSNPVLIKPPDGTNWKVYW--KKVNGEIWFEKGWKDFTQSYSLQQGYLVLFKYRKGtSNF--N 96 
                                46789***********866..66679999***********..999999*************************98655777..6 PP

                                EEEE CS
                         B3  94 vkvf 97 
                                v ++
  Tp57577_TGAC_v2_mRNA15223  97 VLIL 100
                                6665 PP
2B342.61.1e-13211303197
                                EEEE-..-HHHHTT-EE--HHH..HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkf.aeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvF 82 
                                ff++l+++ +l +g+l++p    ++e++       + ++ +   rsW+vkl   + ++++  l++GW+ F+++ gLk gD++vF
  Tp57577_TGAC_v2_mRNA15223 211 FFTILIKPCHLVKGLLWIPGLKgVTEYK------EKYVMLQIGKRSWNVKLLRcNDGKKGRSLSAGWRLFASESGLKLGDVCVF 288
                                5566666666666666666433133443......358899999********665444444689********************* PP

                                EE-SSSEE..EEEEE CS
                         B3  83 kldgrsefelvvkvf 97 
                                +l+++++  ++v+vf
  Tp57577_TGAC_v2_mRNA15223 289 ELINKKDLVFKVHVF 303
                                ***988887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.5639103IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1811103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-1511100No hitNo description
Gene3DG3DSA:2.40.330.101.3E-1812103IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-1312103IPR003340B3 DNA binding domain
PfamPF023621.6E-121999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-15204303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-15205303IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-7211301IPR003340B3 DNA binding domain
PfamPF023627.1E-11211303IPR003340B3 DNA binding domain
CDDcd100179.65E-13211303No hitNo description
PROSITE profilePS5086311.815211303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARRNATLSI RFFKIILQTT LQRLKIPNKF TKSYGVSLSN PVLIKPPDGT NWKVYWKKVN  60
GEIWFEKGWK DFTQSYSLQQ GYLVLFKYRK GTSNFNVLIL GQNAVEIDYD PSCDTDDDEN  120
DNVGDSDDES VQILDEKNNS IDHSDDESVE ILDERLKRKK NRQRSPLGST RPHKKVRSET  180
ENITKRSSCF NWPKGDRAQE VAAKFNSSNP FFTILIKPCH LVKGLLWIPG LKGVTEYKEK  240
YVMLQIGKRS WNVKLLRCND GKKGRSLSAG WRLFASESGL KLGDVCVFEL INKKDLVFKV  300
HVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1418130318140B3 domain-containing transcription factor VRN1
4i1k_B1e-1418130318140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15223
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.11e-136B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3L3E51e-143A0A2K3L3E5_TRIPR; B3 domain-containing protein
STRINGAES707041e-136(Medicago truncatula)
STRINGAES858321e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-19B3 family protein