PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15224
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 325aa    MW: 36589.2 Da    PI: 6.8891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15224genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA15224 14 RGQWTPEEDNKLSTYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                               89********************************************97 PP
2Myb_DNA-binding48.32.3e-1568110246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g+++  E++ +v+++  +G++ W++Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA15224  68 GNFSDAEEQTIVKLHSVFGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                                89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.496965IPR017930Myb domain
SuperFamilySSF466892.02E-2911108IPR009057Homeodomain-like
SMARTSM007175.0E-141363IPR001005SANT/Myb domain
PfamPF002495.7E-171461IPR001005SANT/Myb domain
CDDcd001673.04E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129421.20566116IPR017930Myb domain
PfamPF002491.6E-1368110IPR001005SANT/Myb domain
CDDcd001671.36E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSTYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGNF SDAEEQTIVK LHSVFGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPQAAHLAE AALGCFKDEV LHLLTRKPIN YQGQHSNAAM  180
GNNITDYFNC KPEEREDTVE KIKFDLSKAI QQEHEMVPTN KPWDSTATSA SFAMPYNVFP  240
TMSGFQFSPS YFGNKGDASP WNQSLCTGST CTAMDQQSQF HEKLQEENGD DSEATKEIRN  300
LSNIFNSDCV VWDLPAEDLI NPMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460089.10.0transcription factor MYB80
SwissprotQ7XQN11e-120MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2K3NM810.0A0A2K3NM81_TRIPR; Transcription repressor MYB 4-like protein
STRINGXP_004500173.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-106myb domain protein 103