PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15239

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 100aa MW: 11459.2 Da PI: 10.8596

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15239	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.3	1.2e-26	20	71	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 +prlrWtpeLHe Fv+ ve LGG++kA Pk+il++m+vkgL ++h+kSHLQ Tp57577_TGAC_v2_mRNA15239 20 QPRLRWTPELHEYFVQTVEGLGGKHKASPKHILNMMQVKGLRISHIKSHLQV 71 59*************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.557	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-24	17	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-12	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-19	21	71	IPR006447	Myb domain, plants
Pfam	PF00249	8.6E-7	22	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MKNNNNSKRS GVRKYHKSEQ PRLRWTPELH EYFVQTVEGL GGKHKASPKH ILNMMQVKGL 60 RISHIKSHLQ VHIYSSCSSL IFDQLSINPN LNILKQNLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	20	70	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	20	70	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	20	70	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	20	70	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	20	70	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15239

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553155.2	4e-34	putative Myb family transcription factor At1g14600
Refseq	XP_014517177.1	9e-34	putative Myb family transcription factor At1g14600
Refseq	XP_028212262.1	4e-34	putative Myb family transcription factor At1g14600
Swissprot	Q700D9	7e-21	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A072UUY9	8e-39	A0A072UUY9_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRING	GLYMA18G14071.1	2e-33	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15239