PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15248
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20565.5 Da    PI: 9.1159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15248genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.2e-11950243
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               +i  +++r+  f kR+ gilK  +E+ +LC++e++ i++ ++
  Tp57577_TGAC_v2_mRNA15248  9 FITHNTKRKAAFRKRKIGILKRLNEITTLCGIEACGILYDNN 50
                               78899******************************9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.909151IPR002100Transcription factor, MADS-box
CDDcd002663.60E-19184No hitNo description
SMARTSM004323.4E-8159IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-19394IPR002100Transcription factor, MADS-box
PfamPF003192.6E-10951IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGNKVKLAFI THNTKRKAAF RKRKIGILKR LNEITTLCGI EACGILYDNN NPQPVVWPTD  60
SGAKSVLSRF ASLPESEQSN KKVNQEDFLW KRIEKDFEEL KKEREETRKN VMAIIINHYI  120
YTKEFNGNSM SKNDLNDMSC FIDENLKEIY RKMEGMKIES QEHDGNEAGV MNETKKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15248
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456110.13e-68agamous-like MADS-box protein AGL80
TrEMBLA0A2K3JQQ01e-108A0A2K3JQQ0_TRIPR; Agamous-like mads-box protein agl80-like (Fragment)
STRINGXP_004500460.18e-62(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-25AGAMOUS-like 80