PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15283
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 211aa    MW: 24103.1 Da    PI: 7.3925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15283genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-1680175195
                                EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                f  +l++s+v  +  rl++p +f +e++++   +   t+++  + r+W+v+l+ +++ g + +++GWk+F ++++L++gD + F
  Tp57577_TGAC_v2_mRNA15283  80 FTLKLSRSYVEGHhIRLRIPLSFSKEYMNEF-LQGNATIRSvGDERTWNVTLKLDGCNGNFEMRTGWKSFLQEHNLQVGDECKF 162
                                66788899998874689**********5443.3346777786788*************************************** PP

                                EE-SSSEE..EEE CS
                         B3  83 kldgrsefelvvk 95 
                                ++++r+   ++++
  Tp57577_TGAC_v2_mRNA15283 163 EMTQRKPLLFTIT 175
                                *988777655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-1774176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1975178IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-1978178No hitNo description
SMARTSM010199.3E-1080180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.47881180IPR003340B3 DNA binding domain
PfamPF023624.9E-1482176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRCNNEQDKE SDVDDYAEIA NEGENTKQPF KKKKINPNDS AEANRNRGGS KDMKVKKCTK  60
TIDANKICCT DSHPDENPNF TLKLSRSYVE GHHIRLRIPL SFSKEYMNEF LQGNATIRSV  120
GDERTWNVTL KLDGCNGNFE MRTGWKSFLQ EHNLQVGDEC KFEMTQRKPL LFTITIIPAT  180
KESCPERFQD SPSPISHYKF EVSVTSLDKV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630376.14e-33B3 domain-containing protein REM16
TrEMBLA0A2Z6PQ091e-104A0A2Z6PQ09_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-09B3 family protein