PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15327
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 238aa    MW: 27833 Da    PI: 9.7247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15327genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.4e-1125119198
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+ +l+p +++ +  + +p +f +e+ +k  +  t t+   +   ++vk+++++  +r ++t+GW+ F +  +L+++D++ F++
  Tp57577_TGAC_v2_mRNA15327  25 FQLKLSPCYAHGTF-MKIPSEFSREYLNKF-K-GTATISVGRDVAMKVKMKFDNIYRRSIITTGWNLFNQRYNLQANDICYFEM 105
                                56667666666666.99*********5442.3.378888999999*****999999999************************7 PP

                                -SSSEE..EEEEE- CS
                         B3  85 dgrsefelvvkvfr 98 
                                ++ +  ++ +++fr
  Tp57577_TGAC_v2_mRNA15327 106 TQLQPPSFSITIFR 119
                                75455555777776 PP
2B347.14.2e-151532301799
                                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                 +p++f+++h   + + ++++    + +sW vk+  + ++++  + +GW++F ++ +L+ gD++vF+l+++++f +vv+++rk
  Tp57577_TGAC_v2_mRNA15327 153 NIPNEFFNRHIDCHGKFVEIK---VDEKSWFVKV--NYYPRGSRFCSGWRKFMEDCKLENGDTCVFELIDDKKFVFVVSIVRK 230
                                59999*999944444555566...567*******..66666666889*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1518120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1419119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.78324121IPR003340B3 DNA binding domain
SMARTSM010190.01125121IPR003340B3 DNA binding domain
CDDcd100171.28E-825119No hitNo description
PfamPF023628.1E-933119IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096137231IPR003340B3 DNA binding domain
CDDcd100173.93E-13140229No hitNo description
SMARTSM010191.8E-9142231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-17144231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15147230IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-12154230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVKKAKDRPL TETVNERANS ENPWFQLKLS PCYAHGTFMK IPSEFSREYL NKFKGTATIS  60
VGRDVAMKVK MKFDNIYRRS IITTGWNLFN QRYNLQANDI CYFEMTQLQP PSFSITIFRA  120
IENSSPKKLQ DSEDHNVVKP KTFKLLVNDS YPNIPNEFFN RHIDCHGKFV EIKVDEKSWF  180
VKVNYYPRGS RFCSGWRKFM EDCKLENGDT CVFELIDDKK FVFVVSIVRK KEKPSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498233.16e-74B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S2Y2C91e-72A0A1S2Y2C9_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498233.12e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-10related to vernalization1 1