PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1533

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

EIL

Protein Properties

Length: 236aa MW: 27154.1 Da PI: 6.6881

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1533	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	321.3	2.6e-98	25	234	1	217
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 eelkkrmwkd++ll+++ke++ ++ +e++++ak +e++rrkkmsraQD++LkYM k+m vc+a+GfvYgiipekgkpv+ Tp57577_TGAC_v2_mRNA1533 25 EELKKRMWKDKILLQKMKEKQDKN---NEPELQAK-----QEASRRKKMSRAQDSVLKYMAKIMDVCKAKGFVYGIIPEKGKPVS 101 8************999999974...68877776.....7**************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS EIN3 86 gasdsLraWWkekvefdrngpaaisky....qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166 g+sdsLr+WWk++++fd +p a++ky ++++ + ++++s+ h l++lqD+tlgSLLsalmqhc ppqrrfple+ Tp57577_TGAC_v2_mRNA1533 102 GSSDSLREWWKDQIRFDHSAPLAVAKYlpllEQDEQFN----TMMADPNSYIHLLQDLQDSTLGSLLSALMQHCVPPQRRFPLER 182 ***********************55543333332....2345799******************************** PP --HHHH---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHT CS EIN3 167 gvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhm 217 g++pPWWPtG e wwge+g ++++qg+ppykkphdlkkawkvsvL++vikh+ Tp57577_TGAC_v2_mRNA1533 183 GISPPWWPTGLENWWGEQGlTAQEQGPPPYKKPHDLKKAWKVSVLASVIKHV 234 ***************8899999***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.7E-99	25	234	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.4E-46	147	234	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	6.93E-41	149	234	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MVVISDETEP YGEEEETETE SVDYEELKKR MWKDKILLQK MKEKQDKNNE PELQAKQEAS 60 RRKKMSRAQD SVLKYMAKIM DVCKAKGFVY GIIPEKGKPV SGSSDSLREW WKDQIRFDHS 120 APLAVAKYLP LLEQDEQFNT MMADPNSYIH LLQDLQDSTL GSLLSALMQH CVPPQRRFPL 180 ERGISPPWWP TGLENWWGEQ GLTAQEQGPP PYKKPHDLKK AWKVSVLASV IKHVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-40	147	234	1	87	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-40	147	234	1	87	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1533

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC125389	0.0	AC125389.33 Medicago truncatula clone mth2-12a18, complete sequence.
GenBank	CR940309	0.0	CR940309.6 M.truncatula DNA sequence from clone MTH2-10C20 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003601983.1	1e-149	ETHYLENE INSENSITIVE 3-like 5 protein
Swissprot	Q9FJQ5	1e-100	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A2K3MTY4	1e-170	A0A2K3MTY4_TRIPR; Ethylene insensitive 3-like 4 protein
STRING	AES72234	1e-148	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF322	34	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	2e-99	EIL family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1533

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]