PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15355
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 132aa    MW: 15277.2 Da    PI: 10.9939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15355genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-125083138
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38
                               + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t
  Tp57577_TGAC_v2_mRNA15355 50 PVYRGVRMRS-WGKWVSEIREPRK---KNRIWLGTFAT 83
                               68*****998.**********854...59*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-65083IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-115184IPR016177DNA-binding domain
SMARTSM003801.9E-55193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-175184IPR001471AP2/ERF domain
PROSITE profilePS5103213.7755183IPR001471AP2/ERF domain
CDDcd000181.17E-135283No hitNo description
PRINTSPR003676.3E-75263IPR001471AP2/ERF domain
PRINTSPR003676.3E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MVDANTSSFS SSPSSSSLPQ SLTCSSEEEK KGKKRERENN TNNNNNTKHP VYRGVRMRSW  60
GKWVSEIREP RKKNRIWLGT FATXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVFIFIFVF  120
VFVFVFVFIN A*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453147.14e-27ethylene-responsive transcription factor TINY
SwissprotQ9LYD34e-19DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A072UMT79e-26A0A072UMT7_MEDTR; AP2 domain class transcription factor
STRINGXP_004302874.11e-22(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.12e-18ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]