PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15367
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 438aa    MW: 49588.7 Da    PI: 8.9763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15367genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-16197243148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT+ Ed  lv++v  +G ++W++Ia+++  gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA15367 197 KGQWTANEDRNLVQLVDHFGLRRWSKIAKHLK-GRIGKQCRERWNNHL 243
                                799****************************9.*************97 PP
2Myb_DNA-binding52.41.2e-16249291145
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                + +W++eEd+ l++++k  G++ W+ Ia+ ++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA15367 249 KESWSEEEDKVLIEVHKIVGNK-WAEIAKSLP-GRTENSIKNHWN 291
                                578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.981192247IPR017930Myb domain
SuperFamilySSF466893.59E-30194290IPR009057Homeodomain-like
SMARTSM007178.7E-15196245IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-27198251IPR009057Homeodomain-like
PfamPF139213.5E-17200258No hitNo description
CDDcd001678.18E-14200243No hitNo description
SMARTSM007176.5E-16248296IPR001005SANT/Myb domain
PROSITE profilePS5129419.325248298IPR017930Myb domain
CDDcd001671.46E-12251294No hitNo description
Gene3DG3DSA:1.10.10.602.7E-21252295IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEFDPSFAEN FPKNPCVKPE IPTMVSLKPS LTISPSPSHS TTFLYKNNCN QFKEHRLNGA  60
NHHSSFAKMV PSYINPFSMI PTPSFNAVDD IGSRREIFNG QNPMTFAPNN NKMEVMHGRL  120
NTGKGILDSS KNNLFQYGVT SESRFKSKLQ GDFSGIGGTG NNSRDGDRES VLSEQKRQKR  180
NQNNSEIQPR SDLNIIKGQW TANEDRNLVQ LVDHFGLRRW SKIAKHLKGR IGKQCRERWN  240
NHLRPDIKKE SWSEEEDKVL IEVHKIVGNK WAEIAKSLPG RTENSIKNHW NATKRSLNAK  300
KRPNRRNSLK GTLLQKYICQ VTAVEEAEKD LMMKNPMNMM NIENQQNFES SESDYISEGL  360
ATPEDEIEHY VPMMFNGTAD YGMASGSGSG SGTAMNYDFG SYGMASGSGT AMNYEFYPEV  420
PMKQELDLME MIYRNNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-441942934103B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229KHLKGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15367
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.11e-164transcription factor MYB98
TrEMBLA2Q4M11e-170A2Q4M1_MEDTR; Homeodomain-related
STRINGAES786301e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-57myb domain protein 98