PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15526
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 93aa    MW: 11142.6 Da    PI: 9.273
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15526genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.74e-142791995
                     DUF260 19 apyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
                               +pyfp  + ++f nvh  F ++nv + +++ ++ee +++++++l +eA  r+ +P++G++ v ++ +q++ +l+a+++
  Tp57577_TGAC_v2_mRNA15526  2 RPYFPPGDDANFINVHFTFTNNNVERWITQRETEEqKRNLVRALKWEAGRRLFNPIEGSYTVCMRQRQRITELNAQVQ 79
                               8*************************99998655549************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.996185IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-12179IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MRPYFPPGDD ANFINVHFTF TNNNVERWIT QRETEEQKRN LVRALKWEAG RRLFNPIEGS  60
YTVCMRQRQR ITELNAQVQF LLMLVDHFNQ QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-11LOB domain-containing protein 11