PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15597
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 803aa    MW: 88732.9 Da    PI: 7.2816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-182078357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l++++++p+  +r++L + +    +++ +q+kvWFqNrR +ek+
  Tp57577_TGAC_v2_mRNA15597 20 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRDCpilsHIEPKQIKVWFQNRRCREKQ 78
                               5679*****************************************************97 PP
2START26.61.3e-09159216259
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla 59 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a
  Tp57577_TGAC_v2_mRNA15597 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPA 216
                                7899*************************************************98887 PP
3START56.11.1e-18278346136205
                                --.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 136 ppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                pp  +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+l++s++  +++t++a+l+++++
  Tp57577_TGAC_v2_mRNA15597 278 PP-VPHFVRADVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQ 346
                                66.599***********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1111579IPR001356Homeobox domain
SMARTSM003896.2E-151783IPR001356Homeobox domain
SuperFamilySSF466891.8E-161982IPR009057Homeodomain-like
CDDcd000862.24E-152080No hitNo description
PfamPF000466.4E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-182278IPR009057Homeodomain-like
CDDcd146864.50E-672111No hitNo description
SMARTSM002342.9E-8158347IPR002913START domain
SuperFamilySSF559612.33E-13158348No hitNo description
PfamPF018521.2E-6159216IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-4277343IPR023393START-like domain
PfamPF018521.1E-15278346IPR002913START domain
PfamPF086707.7E-10627672IPR013978MEKHLA
PfamPF086703.3E-24719801IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MMAVSSGSKD GSKVVMDNGK YVRYTPEQVE ALERLYHECP KPTSLRRQQL IRDCPILSHI  60
EPKQIKVWFQ NRRCREKQRK EAGRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENTFF  120
RQHTQNTTLA TTDTSCESVV TSGQQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGS PGVAARACGL VGLEPARPGP DSIGIVAISH GSPGVAARAC  240
GLVGLEPARK IVMLLYRLPK SSKIDFHGIV IAELWIMPPV PHFVRADVLP SGYLIRPCEG  300
GGSIIHIVDH MLLEPWSVPE VLRPLYESSM LLAQRTTMAA LRHLRQISQE VSQPSVTGWG  360
RRPAALXXXX XXXXXXMVYV RDSVLCAKAS MLLQNVPPAI LLRFLREHRS EWADTSIDAY  420
SAAAIKAGPC SLPGARIGGY GGQVILPLAH TIEHEEFMEV IKLENMGYYR DDMTMPGDIF  480
LLQLCSGVDE QAVGTSAELI FAPIDASFSD DAPILPSGFR IIPLDSATDA ASPNRTLDLA  540
SALEVGTTGN KPGGENSGHS GNTKSVMTIA FQFAFEVHLQ DNIAAMARQY VRSIVASVQR  600
VSLALSPSRF GSQNAFHSAP GTPEAQTLTR WICNSYRFYL GVELLKCESS ESILKSLWHH  660
SDAVLCCSLK YDFARQHQFL RLRIXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL  720
ETTLVALQDI TLEKIFDDNG KKTLCSEFPQ IMQQGFTCIQ GGICLSSMGR PITYERAVAW  780
KVLNEEESAH CICFMFINWS FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15597
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2912510.0JQ291251.1 Pisum sativum HB8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603630.20.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLG7J3H40.0G7J3H4_MEDTR; Class III homeodomain leucine zipper protein
STRINGAES738810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1957355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]