PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15659
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 210aa    MW: 23446.5 Da    PI: 9.8088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15659genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-142963135
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                               C++Cg  +TplWR+gp+ ++ LCnaCG ++  +g+
  Tp57577_TGAC_v2_mRNA15659 29 CTHCGINSTPLWRNGPSEKPVLCNACGSHFNTRGT 63
                               *****************9999********998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-122165No hitNo description
SMARTSM004013.2E-62385IPR000679Zinc finger, GATA-type
CDDcd002021.62E-122863No hitNo description
PfamPF003204.7E-122963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-122963IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.532962IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNTSIQPKKK QKNLLPEQSQ LRTTKKGPCT HCGINSTPLW RNGPSEKPVL CNACGSHFNT  60
RGTLENYLPK IVQQAQLLEA NTQEKCENNA QLNIDEAAGE KGFELSNSSS SGVINTNLRN  120
TEIPQSKHSY VKRKKKKKKK KLTPIEKFQK ELLNLYESQK HSKESSRDNI LLDDNMNNFI  180
PNNEIGLGCS LLKTNVTSAD QNHSHGSMD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RKKKKKKKK
2134140KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192451.15e-43GATA transcription factor 26-like
TrEMBLA0A3Q7Y3731e-41A0A3Q7Y373_CICAR; GATA transcription factor 26-like
STRINGXP_004488166.16e-52(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.16e-21GATA transcription factor 27