PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15693
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 336aa    MW: 38414.8 Da    PI: 7.3663
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15693genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-0676101227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  ++C+ f+ +  C+ G++C+F+Hg+
  Tp57577_TGAC_v2_mRNA15693  76 SSVICPEFSNSWRCSKGESCPFSHGR 101
                                5689******99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-470103IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-474101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.79375102IPR000571Zinc finger, CCCH-type
SMARTSM0035663110133IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKRVLEDLIF KSLDEFLFMM QVFPTEKQKM DNSEFMMYTF KVVSCKIRHS HDWSRCCYVH  60
HGEDSRRRDP RKHHYSSVIC PEFSNSWRCS KGESCPFSHG RYEWGLHPSH YRTRFCNNGT  120
ECTREVCFFA HKPEEIRRPE NSSAYSLPTP LSNSGSAHPF RLRPPTIQMP MNFARNTDLH  180
NEFRTNQNMR RLPGIQVDQR GYPPYSTNSD VIGLPQSRAD PSMSSRYDAT SKRSQEFIEH  240
SSMPSFNPNL SSATSVSAEP SNLSGWGSGD RKLDWSIPGD ELNRRTKLYS SGLGNKSSIP  300
TMAAPNVDDP DVLLSEEPWV ESLLKDDDPT SGSDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15693
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590850.21e-61zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K3LI430.0A0A2K3LI43_TRIPR; Zinc finger CCCH domain-containing protein 66-like
STRINGAES611019e-62(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.12e-49C3H family protein