PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15806

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HB-other

Protein Properties

Length: 189aa MW: 22398.7 Da PI: 8.2136

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15806	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.2	4.8e-12	3	38	21	56
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++p++++r++LA++lgL+ +qVk+W qN+++ +k Tp57577_TGAC_v2_mRNA15806 3 ECNHPDEAQRRQLAEELGLQPKQVKYWLQNKKTMMK 38 6899****************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.985	1	40	IPR001356	Homeobox domain
CDD	cd00086	2.12E-8	2	40	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-9	3	40	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.04E-9	3	46	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-9	3	38	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MKECNHPDEA QRRQLAEELG LQPKQVKYWL QNKKTMMKNQ YDKQNNNNLR LENERLRSEN 60 LLMKEALKVI KCEPCGGPPF PEEEHQHYMH KMQRENEQFK REYDHICSNF PFLCTYMLKI 120 VFWGVFFWKP DSEHGCNWFA HLARLESSLS EVPVLRILAG SFECSPSEGN SCLVKIRRYR 180 ARIAFGEL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15806

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486568.1	4e-42	homeobox-leucine zipper protein HDG11-like
TrEMBL	A0A2Z6MI78	6e-47	A0A2Z6MI78_TRISU; Uncharacterized protein
STRING	XP_004486568.1	1e-41	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1026	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03260.1	3e-15	homeodomain GLABROUS 8

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15806