PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15924

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 114aa MW: 12513 Da PI: 4.2543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15924	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	53.7	5.9e-17	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l el++++ee Tp57577_TGAC_v2_mRNA15924 2 VPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNVIREE 53 7899******************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.742	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-15	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
EVPENQRADA ANSLVYEANV RLRDPVYGCM GAISSLQQQI QSLLGELNVI REEIHKYKLM 60 EANMIPSSED LSIASSTLPS TTSLPMLPSS IYTQQTNPTN YSSISSDHIS YFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-17	1	68	58	125	LOB family transfactor Ramosa2.1
5ly0_B	4e-17	1	68	58	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15924

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	1e-131	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616758.1	6e-69	LOB domain-containing protein 15
Swissprot	Q9AT61	3e-24	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	G7KH28	1e-67	G7KH28_MEDTR; LOB domain protein
STRING	AES99716	2e-68	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-21	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15924

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]