PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1596

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 200aa MW: 22553.6 Da PI: 4.4855

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1596	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	1e-06	71	113	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+r+ + + L ellP++ + a iL ++Y+++Lq Tp57577_TGAC_v2_mRNA1596 71 QQRRQRLADNLKALHELLPNP---EMGSQAQAYILDDIIDYVNYLQ 113 69*****************...99*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.511	61	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-8	71	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	71	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.48E-5	71	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MHFMDKFGVN INFPNNQMKH TETVEIFQKP VLNIREPEKQ SNESSSDNIL LYDNVNNFIP 60 NNEIGLGSSL QQRRQRLADN LKALHELLPN PEMGSQAQAY ILDDIIDYVN YLQVQVKELS 120 GSKLQADSNA IPLVFHEGYG HYIKGQMLNE PLEEIMGKLL EEDSAAASQL LEKKGLIMLP 180 ISLADDLNQA IQLWNQSSM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1596

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495294.1	1e-64	transcription factor bHLH83
TrEMBL	A0A2K3LS96	6e-84	A0A2K3LS96_TRIPR; Transcription factor bHLH66 (Fragment)
STRING	XP_004495294.1	6e-64	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-20	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1596