PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA15960

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 139aa MW: 15323.3 Da PI: 5.9839

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA15960	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.1	8.3e-16	32	81	51	100
DUF260 51 eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ r da++slvyeA++r+rdPvyG++g i++lqqq+++l el++++ee Tp57577_TGAC_v2_mRNA15960 32 PKARADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNVIREE 81 6779****************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.43	1	82	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-13	32	79	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
YSLVENGFYV VGIPIIPTII TPEDVKSRLE GPKARADAAN SLVYEANVRL RDPVYGCMGA 60 ISSLQQQIQS LLGELNVIRE EIHKYKLMEA NMIPSTEDVS IASSTLTIYN NTTNASFFHL 120 HTTTKSYHPP SNSEVDKH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA15960

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR938710	2e-98	CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616758.1	2e-39	LOB domain-containing protein 15
TrEMBL	G7KH28	4e-38	G7KH28_MEDTR; LOB domain protein
STRING	AES99716	6e-39	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-18	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA15960