PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16018

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 379aa MW: 40964.3 Da PI: 9.0748

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16018	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	75	133	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++kcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s Tp57577_TGAC_v2_mRNA16018 75 ATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 133 5689**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	55	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	76	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MVFPSLPIYQ DPPNWSPQQG GIGIGTQNPS PLQQPSASTV IVTVEADGSY QGSIRQGSMI 60 DQAKMSKIHQ NDVAATQKCP RCESTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNN KRSKGNSISK STSKPNRNDH RLVGTGGGGG GSSSVSANSS SINGCTNSNV 180 NVGISHFPTQ FPFLASLHHY NNNDYVSQGI GPMVTKNITN STNTSVEFQL GSGFSIGNTT 240 NGGSLLLSNG IGEQWKFPNL LQVHQQQQQQ ENHQQFPFLT SLEPQIGLFQ FGGENNDETQ 300 RNFIRSKATD SSSVSIGMMP QVNIVKMEEN NCQGLSLSKN LLSGLGNSND LFWNGNGSGN 360 ANAWNESPSF TPSPSQLL*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MVFPSLPIYQ DPPNWSPQQG GIGIGTQNPS PLQQPSASTV IVTVEADGSY QGSIRQGSMI  60
DQAKMSKIHQ NDVAATQKCP RCESTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV  120
PVGGGCRRNN KRSKGNSISK STSKPNRNDH RLVGTGGGGG GSSSVSANSS SINGCTNSNV  180
NVGISHFPTQ FPFLASLHHY NNNDYVSQGI GPMVTKNITN STNTSVEFQL GSGFSIGNTT  240
NGGSLLLSNG IGEQWKFPNL LQVHQQQQQQ ENHQQFPFLT SLEPQIGLFQ FGGENNDETQ  300
RNFIRSKATD SSSVSIGMMP QVNIVKMEEN NCQGLSLSKN LLSGLGNSND LFWNGNGSGN  360
ANAWNESPSF TPSPSQLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16018

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003621892.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A2K3NE75	0.0	A0A2K3NE75_TRIPR; Dof zinc finger protein
STRING	AES78110	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	5e-37	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16018