PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16032

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WOX

Protein Properties

Length: 280aa MW: 31922.8 Da PI: 6.5181

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16032	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.8e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F+ + +ps+e+++eL+++l +++e++V++WFqNrRa+ k+ Tp57577_TGAC_v2_mRNA16032 91 RQRWTPTPLQLQTLERVFKAeTGTPSKEMIKELTANLtkhgEISETNVYNWFQNRRARSKR 151 89***************88************************************97 PP
2	Wus_type_Homeobox	88.1	9.3e-29	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++ Le+++k+ + tP+ke i+++ta+L+++G+i+++NV++WFQNr+aR+++kq Tp57577_TGAC_v2_mRNA16032 90 SRQRWTPTPLQLQTLERVFKAETGTPSKEMIKELTANLTKHGEISETNVYNWFQNRRARSKRKQ 153 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.1E-17	85	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.544	87	152	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.1E-16	88	156	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-13	89	156	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-18	91	151	IPR001356	Homeobox domain
CDD	cd00086	2.95E-13	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
LLHKGYNINK SNKDMEFQND RRHWNVEMMY MKKVMTDEQI ETLRKQIAAY GTICEQLVQM 60 HHKTISSHHN LTGARLRGMC FDPMISKIGS RQRWTPTPLQ LQTLERVFKA ETGTPSKEMI 120 KELTANLTKH GEISETNVYN WFQNRRARSK RKQQSSTPTS VSTEPEVPAE VDSKDKKTKP 180 DDLVAFQPAD STEPEVPAEV DSKDKKTKLD DLVVFQPAEN LFNNVCCGSQ YLNPESDDSL 240 RSSKNFDHVA AIDEMLSNSR SSDYLVENLE APENKNIEG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16032

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004492097.1	4e-99	WUSCHEL-related homeobox 13-like
Swissprot	O81788	3e-54	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2Z6LJV0	1e-136	A0A2Z6LJV0_TRISU; Uncharacterized protein
STRING	XP_004492096.1	2e-98	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-49	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16032

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]