PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16269
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 285aa    MW: 32145.5 Da    PI: 9.7356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16269genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.77e-211041831398
                                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 ++l lpk+f ++ ++  + +  +tl+ +s  +W+v l  + ++++ ++t+GW++Fvk++ Lke+Df+vFk++g+s f   + +
  Tp57577_TGAC_v2_mRNA16269 104 DQQLALPKTFSNNVKK--KLTENVTLRGPSRVVWKVGL--TTRDDALYFTNGWQQFVKDHSLKENDFLVFKYKGESHF--EILI 181
                                4679******855554..46779***************..**********************************9999..6666 PP

                                E- CS
                         B3  97 fr 98 
                                f+
  Tp57577_TGAC_v2_mRNA16269 182 FD 183
                                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2391183IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.29892185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-2394183IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-1994183No hitNo description
SMARTSM010191.3E-1895185IPR003340B3 DNA binding domain
PfamPF023623.8E-17104183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTFCYKTSNF HSFSHKSGEK KKHRNYSSLF SISLLQNPAP SLLFSCYNKK LAPFNHFIPF  60
SHFTASLLQM EVVGVGRSKS WEEDIYWTHF QFIHFTQFLR NDFDQQLALP KTFSNNVKKK  120
LTENVTLRGP SRVVWKVGLT TRDDALYFTN GWQQFVKDHS LKENDFLVFK YKGESHFEIL  180
IFDGESLCEK TASYFVGKCR PAQTEQGGSK AKDTASNGGV ETPLVVPIGT NNGKTCNAGV  240
ESASPEKLTV DALTKTTTIQ FPFQPTGKRA EKPVNEVTPV QTKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589270.25e-88uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631135.15e-88uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631136.15e-88uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631137.14e-88B3 domain-containing protein REM13 isoform X2
RefseqXP_024631138.13e-89uncharacterized protein LOC11411561 isoform X3
RefseqXP_024636626.17e-93B3 domain-containing protein REM16
TrEMBLA0A2K3MRE81e-122A0A2K3MRE8_TRIPR; B3 domain-containing protein
STRINGAES595312e-90(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-43B3 family protein