PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16294
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 160aa    MW: 18460.4 Da    PI: 8.8071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16294genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.7e-12611233496
                                SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  34 ktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                ++++l +++g++W+v+     ++       + +++GW +Fv+ ng+k+g +++F+l++++e    v++
  Tp57577_TGAC_v2_mRNA16294  61 IKIILHNLKGEQWTVNAVNidSN---VyryHSIRGGWIDFVRGNGIKVGNVCIFELMRENEL--SVRI 123
                                4799************9444333...333699***********************9985444..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1426124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-1630124IPR015300DNA-binding pseudobarrel domain
CDDcd100177.10E-1433123No hitNo description
SMARTSM010196.3E-535127IPR003340B3 DNA binding domain
PROSITE profilePS5086310.84262127IPR003340B3 DNA binding domain
PfamPF023621.3E-962123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MMTIIFVAAE LHFQGHQYVI EKKIAQSYTS TFPYFVKIIQ KFNVGGSCLL EILFCNLFYI  60
IKIILHNLKG EQWTVNAVNI DSNVYRYHSI RGGWIDFVRG NGIKVGNVCI FELMRENELS  120
VRIAEVGKDG LELDIQDEKL DFSVPSARQD VRKRRQWRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499102.12e-40B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_027189765.12e-40B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A1S2Y4B74e-39A0A1S2Y4B7_CICAR; B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A3Q7YF214e-39A0A3Q7YF21_CICAR; B3 domain-containing protein Os01g0723500-like isoform X2
STRINGXP_004499102.17e-40(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2790923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-07B3 family protein