PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16297
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 339aa    MW: 37774.8 Da    PI: 8.6522
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16297genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.51.7e-20781531798
                                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                 lpk f ++ +  k+ +  +tl+ +sg +W+v l  + ++++ ++t+GW++Fvk++ Lke+Df+vFk++g+s f   v +f+
  Tp57577_TGAC_v2_mRNA16297  78 ALPKAFSNNVK--KKLPENVTLRGPSGVVWNVGL--TTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYKGESHF--EVLIFD 153
                                58999974444..458889***************..9*********************************9999..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2445153IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.08662155IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-2362153IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1564155IPR003340B3 DNA binding domain
PfamPF023623.4E-1778153IPR003340B3 DNA binding domain
CDDcd100174.06E-2179153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEGVRGKPTY GGSKSWEEDI YWTHFQFIHF TQFLRNDFHQ QLVSTPLHFF SFLSRSKMEE  60
KFNLYKLIIF GCSVHFHALP KAFSNNVKKK LPENVTLRGP SGVVWNVGLT TRDDTLYFTN  120
GWQQFVKDHS LKENDFLVFK YKGESHFEVL IFDGESLCEK TASYFVRKCG HAQTEQGGSK  180
AKDTNTCAEE VINTASNGGV ETLSVLLFGT TNGKTGNAGV EPVSPEKLTA DALTKTTPIQ  240
VPFQPTGKRT EKPVNEVMPV QTKKRGRPPK AGNSFERAHD LVACNKQHSA AAILNRSGNE  300
DEEEKIAQSF TSSFPYLVKI IGTCNVISSR TLVSCSLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589279.11e-115B3 domain-containing protein REM16 isoform X1
TrEMBLA0A2K3MRE80.0A0A2K3MRE8_TRIPR; B3 domain-containing protein
STRINGAES595301e-115(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-47B3 family protein