PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16298
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 289aa    MW: 31588.3 Da    PI: 6.6855
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16298genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19371131292
                                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                 +++l lpk+f ++ +  k+ +  +tl+ +sg  W++ l  + +++++++++GW++Fvk++ Lke+Df++Fk++g+s fe 
  Tp57577_TGAC_v2_mRNA16298  37 FQQQLALPKTFSNNVK--KKLPENVTLKGPSGVLWNIGL--SIRDDTVYFEDGWQRFVKDHSLKENDFLLFKYNGESLFEV 113
                                45689******85555..458889***************..99999***************************99877743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-2325117IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1526119IPR003340B3 DNA binding domain
PROSITE profilePS5086315.77726119IPR003340B3 DNA binding domain
CDDcd100178.68E-2028116No hitNo description
Gene3DG3DSA:2.40.330.102.4E-2329117IPR015300DNA-binding pseudobarrel domain
PfamPF023626.5E-1637113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGGRGQTSGS SSKSWQEEIY WNHFQFIHFI LFLRNDFQQQ LALPKTFSNN VKKKLPENVT  60
LKGPSGVLWN IGLSIRDDTV YFEDGWQRFV KDHSLKENDF LLFKYNGESL FEVFIFEGES  120
NCEKAAAYFV GKCDNVKADQ GGSKAKDTNT SAEEVITASD GGSSEKFRRL NSTGTPLAVP  180
FETTNEKTSN AGAKSDSPEQ FMADAVTKTA PAALPVQRTS KRGAKKPVVE AVSVPAKKRG  240
RPAKAASSSP EPVLDLVPLN LVVCSKDKEH SGSKGKEDVD DHEIEDGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636626.11e-114B3 domain-containing protein REM16
TrEMBLA0A2K3P6E11e-179A0A2K3P6E1_TRIPR; B3 domain-containing protein
STRINGAES595311e-106(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-43B3 family protein