PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16303
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 683aa    MW: 76627.8 Da    PI: 8.7073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16303genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-19391151295
                                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 +++l lpk+f ++ ++    +  +tl+ +sg  W+v l  + ++++ ++t+GW+eF k++ Lke+Df+vFk++g+s f   v 
  Tp57577_TGAC_v2_mRNA16303  39 FQQQLALPKTFSDNLKK---LPENVTLKGPSGVMWNVGL--TTRDDTLYFTNGWQEFMKDHSLKENDFLVFKYNGESLF--EVF 115
                                45679******955533...5567***************..9*******************************998877..444 PP
2B3551.5e-17354446196
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvF 82 
                                f+k+ ++ +v+ s++l +p +f  +h   ++++++++l +++g+ W+v+    ++   + ++l +GW +Fv++ng+k+gD+++F
  Tp57577_TGAC_v2_mRNA16303 354 FVKIIKTFNVSGSQILNIPYEFSMAHL--PNCNIKIILHNLKGEHWTVNSVTrTRVH-TnHTLCGGWLDFVRDNGIKVGDVCIF 434
                                889999999*************98996..4699****************96533333.359999******************** PP

                                EE-SSSEE..EEEE CS
                         B3  83 kldgrsefelvvkv 96 
                                +l+++ e   +v++
  Tp57577_TGAC_v2_mRNA16303 435 ELIRECEL--RVHI 446
                                **996555..5554 PP
3B345.71.2e-14585669186
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                                f+kv+++ + + s  l +p+ f  +h   + +++++tl++++g+ W+v+   + k ++ y+l +GW+ Fv++n+++ gD+++F+
  Tp57577_TGAC_v2_mRNA16303 585 FVKVMKNFNISGSYTLKIPNWFSVAHL--PGCKTEVTLRNSRGECWTVNSVPDAKLRKnYTLCGGWNTFVRDNDINIGDTCIFE 666
                                789999999999999*******99994..458889***************775555555************************* PP

                                E-S CS
                         B3  84 ldg 86 
                                l++
  Tp57577_TGAC_v2_mRNA16303 667 LVS 669
                                876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2226118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.6528120IPR003340B3 DNA binding domain
CDDcd100171.22E-1830118No hitNo description
Gene3DG3DSA:2.40.330.107.3E-2230118IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-1731120IPR003340B3 DNA binding domain
PfamPF023621.5E-1540115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-23345447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-24347447IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-21352446No hitNo description
PfamPF023622.7E-14354446IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761354450IPR003340B3 DNA binding domain
SMARTSM010197.2E-14354450IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-21578678IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-20579677IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-17583677No hitNo description
PROSITE profilePS5086312.224585681IPR003340B3 DNA binding domain
PfamPF023621.2E-12585669IPR003340B3 DNA binding domain
SMARTSM010192.1E-4585681IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
LFEMETRRQN SGGSKSWEED IYWTHFQFIH FTQFLTTDFQ QQLALPKTFS DNLKKLPENV  60
TLKGPSGVMW NVGLTTRDDT LYFTNGWQEF MKDHSLKEND FLVFKYNGES LFEVFIFDGE  120
SNCEKAASYF VGKCGDAQTE QGGNEAKDTK NSVEEFNTAS DGGVECGSPE KFQHLNSGNV  180
HTEQGGCEGK DTNNCVEEVN TASNGGVECC TPLKFRSVNS IRTPLVAPSK TSNEKTFNAG  240
VESASPEQFM ADAVTKTAPV VFHFHRTGKR TKRPFNEVMS TPSKRRKGSP KAANSWQRGL  300
DWLACNKEHS EADILYRNGK EDDHYILSGA SLSTLSAREE KKIAQSFTSS FPYFVKIIKT  360
FNVSGSQILN IPYEFSMAHL PNCNIKIILH NLKGEHWTVN SVTRTRVHTN HTLCGGWLDF  420
VRDNGIKVGD VCIFELIREC ELRVHIAEVG KDGLDSQIEK LASSMLSARC DVACHKTSRY  480
MPKNPKTNSM CRNKVDKVDL SNKKLSKIGQ GAALSILKKY GRASNTSKKM GICPKSKAVH  540
KKLALRRKHR VEKDQSSQAN AGVRKLCALN EQRVAEAFGS PFPNFVKVMK NFNISGSYTL  600
KIPNWFSVAH LPGCKTEVTL RNSRGECWTV NSVPDAKLRK NYTLCGGWNT FVRDNDINIG  660
DTCIFELVSH YVMQVHKWEC ET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0536381e-122BT053638.1 Medicago truncatula clone MTYFT1G-K-15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589270.20.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631135.10.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631136.10.0uncharacterized protein LOC11411561 isoform X1
TrEMBLG7I4K40.0G7I4K4_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004499102.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-35B3 family protein