PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16415
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WOX
Protein Properties Length: 354aa    MW: 39139.4 Da    PI: 3.9924
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16415genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073392456
                               S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                               +ps  e++++ ++l     + e++V++WFqN++ + k
  Tp57577_TGAC_v2_mRNA16415  3 TPSSGEIKRICAQLqefgPVGESNVFYWFQNQKSRNK 39
                               89************99999****************98 PP
2Wus_type_Homeobox55.91e-181412464
          Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                               + tP++ ei+ri a+L+e+G +++ NVfyWFQN+k+R++ k
  Tp57577_TGAC_v2_mRNA16415  1 MTTPSSGEIKRICAQLQEFGPVGESNVFYWFQNQKSRNKDK 41
                               689************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.3E-5339IPR001356Homeobox domain
SuperFamilySSF466897.62E-6346IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTTPSSGEIK RICAQLQEFG PVGESNVFYW FQNQKSRNKD KHKQRQPYNK KSARVIKKSA  60
ISYGNAALIP TQNVTETPHS SSSSSHDHQN APPSELLVPN NDEFVGLNQN QVDAFCYNPT  120
QTDLQLPSTT TPFFSDQPAA APTQTDLQLP TTPFFSDELL NMSQPAFPTQ TDLQLPTTPF  180
FSDELLNVIQ PVLAPQTVDV PDLLNDEDFI SYLNDQHDQG NNQDEGASMN MLQQEEEPQL  240
NFGVSSNISN HDSTDLAPLP PITIEAPVVD PFPITQFQGV GEADGGLAKC TVSINNQVFD  300
IDVGRFNVCE IFGDGVIFVD CFFQPVPIDE WGVTLEPLQN GASYFLVRMY IFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16415
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KZ040.0A0A2K3KZ04_TRIPR; WUSCHEL-related homeobox 9-like protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-12homeobox-3