PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16446
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30958.2 Da    PI: 4.6214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16446genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-1963114556
                                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +f++eq++ Le++Fe ++ +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Tp57577_TGAC_v2_mRNA16446  63 KRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 114
                                57*************************************************9 PP
2HD-ZIP_I/II114.94.9e-3763152493
                HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                                +r+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L+++y++l+++ e+++ke ++L
  Tp57577_TGAC_v2_mRNA16446  63 KRFSDEQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQSSYNNLASKFESMKKERQTL 146
                                8*********************************************************************************** PP

                HD-ZIP_I/II  88 reelke 93 
                                  +l++
  Tp57577_TGAC_v2_mRNA16446 147 LIQLQK 152
                                999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-1846118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-1947116IPR009057Homeodomain-like
PROSITE profilePS5007117.70256116IPR001356Homeobox domain
SMARTSM003898.4E-1656120IPR001356Homeobox domain
PfamPF000463.7E-1663114IPR001356Homeobox domain
CDDcd000862.64E-1465117No hitNo description
PRINTSPR000311.2E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.2E-596112IPR000047Helix-turn-helix motif
PfamPF021834.3E-13116157IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDLKLDYERE CGVGSVYERG GSESNIENME YGQYSYSTEA GEEETYTTSS TSSMRKKKNK  60
NPKRFSDEQI KSLETMFETE SRLEPRKKLQ LARELGLQPR QVAIWFQNKR ARWKSKQLER  120
EYNKLQSSYN NLASKFESMK KERQTLLIQL QKLNDLIQKP IEQSQSSSQV KEANSMESES  180
GNGGTIKCEA EVKPSTSIER SEHVLDVLSD DDTSIKVEYF GMENEPSLMN FAEHADGSLT  240
SPEDWSAFES NDLLGQSSCD YQWWDFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16446
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5086490.0JX508649.1 Medicago sativa homeobox-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627511.21e-153homeobox-leucine zipper protein ATHB-12
SwissprotP468977e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2K3MXC01e-177A0A2K3MXC0_TRIPR; Homeobox-leucine zipper protein ATHB-7-like
STRINGAET019871e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-65homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]