PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16457

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 260aa MW: 28666.8 Da PI: 8.5729

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16457	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+ Tp57577_TGAC_v2_mRNA16457 20 PQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKV 79 6899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	15	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.966	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEGLAPNSCP RQGLEKKARP QEQINCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKKVI NPSSTKIPDL NPPTLVQVSP LSNSQNPKMQ GGQDLNLAFP 120 SMENYHQHHH GMSSYVEMHN NNESSSSALD LLRSSMASRG LNPYANNNNT LMTNSNTIFP 180 SGFPMQEVKP SLGFSIDGIN GNRSYDDHVH VQEGGGGRLL FPFGDVNKQL STSGVEVEHN 240 KEQGNSTGFW NGMIGEGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16457

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF220932	3e-55	KF220932.1 Glycine max cultivar Pureun clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBank	KF220934	3e-55	KF220934.1 Glycine max cultivar Ilpumgeomjeong clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBank	KF220940	3e-55	KF220940.1 Glycine soja cultivar IT162825 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBank	KF220941	3e-55	KF220941.1 Glycine soja cultivar IT178480 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024629469.1	1e-154	dof zinc finger protein DOF3.7
Swissprot	Q43385	3e-61	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A2K3M0E2	0.0	A0A2K3M0E2_TRIPR; Dof zinc finger protein
STRING	XP_004510648.1	1e-137	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-57	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16457