PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16468

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 107aa MW: 12092.5 Da PI: 8.0568

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16468	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.2	3.6e-10	50	97	1	44
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreee 44 +fY +YA+++GF +r ++k+ k+++++ + ++vC+k+g+++ + Tp57577_TGAC_v2_mRNA16468 50 DFYGNYAYHTGFCIRSMLKSKNnsqnKKSDKVHDVRYVCNKQGFKKGS 97 6*********9997655544445699999***********9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-7	50	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MDSISTSSEI EQLTVETSSL IHADSSQCYS PSNKESWESL VFESIKEIED FYGNYAYHTG 60 FCIRSMLKSK NNSQNKKSDK VHDVRYVCNK QGFKKGSLLN PKNRPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16468

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU467812	1e-126	CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	7e-61	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K3LGX9	1e-72	A0A2K3LGX9_TRIPR; FAR1-related protein (Fragment)
STRING	AES76326	2e-58	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16468