PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16605
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 200aa    MW: 23360.3 Da    PI: 5.6878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16605genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.18.8e-243595259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                               +Dgy+WrKYGqK++ ++++ rsYYrC+++   +C + k+v+r +edp +  +tY g+Hn++
  Tp57577_TGAC_v2_mRNA16605 35 EDGYEWRKYGQKKIMKAKYLRSYYRCSYKseqDCAAMKQVQRIQEDPPLYRTTYYGHHNCK 95
                               8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-242895IPR003657WRKY domain
PROSITE profilePS5081120.7252997IPR003657WRKY domain
SuperFamilySSF1182906.93E-243195IPR003657WRKY domain
SMARTSM007742.4E-323496IPR003657WRKY domain
PfamPF031061.4E-233595IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MIRKSLTTDN PYPYYVILIR SDAITWEKDS SILIEDGYEW RKYGQKKIMK AKYLRSYYRC  60
SYKSEQDCAA MKQVQRIQED PPLYRTTYYG HHNCKTSLSN SDITLLEPNN TSSMIINFND  120
SYKTKEQYPS FSSSLPASTK QEPVEVMIPY DHIVENQLIS SDYYPLSCDY ELEFDYFRHA  180
TMLSSTQSVE FDSKACFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-183495869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632081.16e-87probable WRKY transcription factor 70
TrEMBLG7ITD84e-91G7ITD8_MEDTR; WRKY family transcription factor
STRINGAES665568e-89(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.18e-25WRKY DNA-binding protein 38