PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16897

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 380aa MW: 41352.1 Da PI: 8.4043

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16897	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	57	117	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Tp57577_TGAC_v2_mRNA16897 57 QQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 117 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	59	115	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-29	60	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	61	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MFGNCVHEKT VITSNKLTQS IEIDDHHNNK VSISMASSSG GGNRVMEKPG QELVQQQQQA 60 LRCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPN 120 HSSSNNNIDS PSSSNPTSVT ANSNPSSQQQ HHSFDVANST SNHINTLLYG NNSCHDVMNF 180 PFATRFNSTR VSSSGSGYDH LQQNGLGLGF SPGLANLNHH DDYRNGFSTT SNNNNYSSIF 240 GSSMGSTTPV MSSLLSSTLL QQKFMSTVGG GGGGNDGSMK GDLFHHHDMK MEGNSRSDEV 300 ELMASKEGLN RLDQWNNNNM NGTNGVAFQN QMENMGLSDS GYWNNSNNNN NNIATTGLSS 360 IWSTDQPNNI GSNSVTSLI*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MFGNCVHEKT VITSNKLTQS IEIDDHHNNK VSISMASSSG GGNRVMEKPG QELVQQQQQA  60
LRCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPN  120
HSSSNNNIDS PSSSNPTSVT ANSNPSSQQQ HHSFDVANST SNHINTLLYG NNSCHDVMNF  180
PFATRFNSTR VSSSGSGYDH LQQNGLGLGF SPGLANLNHH DDYRNGFSTT SNNNNYSSIF  240
GSSMGSTTPV MSSLLSSTLL QQKFMSTVGG GGGGNDGSMK GDLFHHHDMK MEGNSRSDEV  300
ELMASKEGLN RLDQWNNNNM NGTNGVAFQN QMENMGLSDS GYWNNSNNNN NNIATTGLSS  360
IWSTDQPNNI GSNSVTSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16897

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP015675	1e-82	KP015675.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-235 mRNA sequence.
GenBank	KP015676	1e-82	KP015676.1 Vicia sativa subsp. sativa SSR marker NAC-VSspS-236 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456998.1	1e-162	dof zinc finger protein DOF1.4 isoform X1
TrEMBL	A0A2K3N173	0.0	A0A2K3N173_TRIPR; Dof zinc finger protein
STRING	XP_004505077.1	1e-135	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16897