PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA16968

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YC

Protein Properties

Length: 285aa MW: 31849.5 Da PI: 4.8968

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA16968	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.8	2.8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++++v+ +ifdfl d+v + Tp57577_TGAC_v2_mRNA16968 6 DTRFPAARIKKIMQTDEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNIFDFLNDTVSK 86 5789*************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-27	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.4E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	4.9E-20	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YEITLRRGAK 60 TVNAFHLKQC VQTFNIFDFL NDTVSKVPDL GGSVATDDDQ TVTKRRKVAE GDNNDSDEET 120 KRSKMPEPAQ TGGRGRGRGR GRGRGRGRGS KTADQETSLH IKFEDDSVLK QNGNHTQSNG 180 SPEIKQEPEE VKHCSPVRKP AEVFVRNIDL NMDPDDDMDF ISTPTPVPTG SSSKSISEEK 240 SEEKVDEYPG WSLSDMEKMA IDPIQLANLN KRIDEDMEDY DEEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA16968

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518474.1	1e-130	dr1-associated corepressor
Refseq	XP_028219364.1	1e-130	dr1-associated corepressor-like
TrEMBL	A0A2K3LG97	0.0	A0A2K3LG97_TRIPR; Dr1-associated corepressor-like protein
STRING	GLYMA02G44500.2	1e-130	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-60	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA16968