PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16976
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 261aa    MW: 30394.2 Da    PI: 7.0616
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16976genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35261172102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y++++d+ +++++sws+++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++
  Tp57577_TGAC_v2_mRNA16976  26 FLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEY 100
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                Fkkg k+ll++i+r+k+
  Tp57577_TGAC_v2_mRNA16976 101 FKKGAKHLLCEIHRRKT 117
                                ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.07E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAFTLERCED NMMFTMESQK SVPAPFLTKT YQLVDDPLTD HIVSWSDDET TFVVWRPPEF  60
ARDLLPNFFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FKKGAKHLLC EIHRRKTPQN  120
YHQQYYEQQS PQFHQQDHES ICWIDSPLPS PKSNTDILTA LSEDNQRLRK KNFMLLSELT  180
HMKNLYNDII YFIQNHVSPA TTSFEQRSNN SAILKLVELD SSASQLANDN NVVKDSNSSY  240
VKLFGVPLCG KKRVHPSNLD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-211611711122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA16976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617219.11e-159heat stress transcription factor B-4b
SwissprotQ7XHZ07e-85HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2K3LMR40.0A0A2K3LMR4_TRIPR; Heat stress transcription factor b-4-like protein
STRINGAET001781e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-86heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]