PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17007
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 154aa    MW: 16808.7 Da    PI: 6.622
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17007genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA42.81.7e-1334573558
                  CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
                                +pylheSRh hAl+R+RgsgGrF
  Tp57577_TGAC_v2_mRNA17007 34 LQPYLHESRHLHALKRARGSGGRF 57
                               58*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115216.75160IPR001289Nuclear transcription factor Y subunit A
SMARTSM005212.3E-5960IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-103457IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
LNVVENNESE SKCTFLFPFP LSKITLNNIL NIVLQPYLHE SRHLHALKRA RGSGGRFLNT  60
KKLQDHGLSI SAATRLNPSG YVPELKVHQV ENYRDGASTT TCSEVTSASN SDDMFQQDES  120
DFKSCDYPSH MQGFSTDTGG GGGGNQSHMS ILM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510428.15e-60nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_004510429.14e-60nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLA0A1S2YV671e-58A0A1S2YV67_CICAR; nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A1S2YV749e-59A0A1S2YV74_CICAR; nuclear transcription factor Y subunit A-3 isoform X2
STRINGXP_004510428.12e-59(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.36e-21nuclear factor Y, subunit A3