PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17023
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 517aa    MW: 57120 Da    PI: 5.2567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17023genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09328375455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA17023 328 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 375
                                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17322393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-10322379No hitNo description
PROSITE profilePS5088815.663324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-17324392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6328375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MENQFFLNVG FEPSPHSSMP TWQSISSTME IQQTSLNCSI DQTQDCFFNP NWDNKSTDQN  60
LNFDSALSSI VSSPAATSSS PQNPNKISNE NFVMRELLGK LGTFGEISQH SNLNNNIVPM  120
MNSSVPEFSA DPGFVQRAAK FSCFGSKSFN ERSNQHVMNN VDLPQRSVNL LPRVSSSPSL  180
KNFGSQMGYK ENKNSPLQQE NERIEVTNSQ EESTISEQNT PNGEMGVKAS LDMNSRKRKA  240
SSSKGKVSNF TNPTTKGVEG SGEDSNAKKS KSNEGERNEN GGMNMEEESK EGKNDAGEEK  300
QNKSNSKAPE PQKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK  360
ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RMDLSIESLV LSKDIFQSNN SLQNSIFQLD  420
SSSPSFYGQQ PQQNQTIATT NGTHCSVDPL DSALCINLPS LNGFNEGDSQ YPLTFSEEDL  480
NTIVQMGFGQ TSNRTTPIHS PTFNGSNQAT QMKIEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626938.20.0transcription factor bHLH62 isoform X2
TrEMBLA0A2K3NEL40.0A0A2K3NEL4_TRIPR; Transcription factor bHLH62-like protein
STRINGAET014140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-71bHLH family protein