PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17086
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 175aa    MW: 20122.3 Da    PI: 9.4003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17086genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10960255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                               r+  + +E+ RR ++++  ++  +llP++   +skK  s  + +e+A++YIk+Lq
  Tp57577_TGAC_v2_mRNA17086  9 RVDRKTIEKIRRIQMKDLCNKVYSLLPHQ---TSKKaISTPDKVEEATKYIKKLQ 60
                               667789**********************9...99999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-4564No hitNo description
PROSITE profilePS508889.636759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-9973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-8973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEDNPSSSRV DRKTIEKIRR IQMKDLCNKV YSLLPHQTSK KAISTPDKVE EATKYIKKLQ  60
INLEKMKEKK NFLLGIQRST NVDMDRSKNL GFKSPKIEIQ QFGLVLEVVL ITCLDSHFLF  120
NETIRVLQEE GVDIVNASYK VNEDSVFHSI HCQVGEFGNE VARISEKLKK FIYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1498013e-94AC149801.3 Medicago truncatula chromosome 2 clone mth2-32i15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593591.13e-93transcription factor bHLH162
TrEMBLG7IPU76e-92G7IPU7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES638421e-92(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-41bHLH family protein