PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17097

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 292aa MW: 32180.6 Da PI: 8.8163

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17097	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg ++n+k+s Tp57577_TGAC_v2_mRNA17097 39 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYKRNNKRS 99 57899************************************************99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	39	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-32	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MLANCEKMVS IPPTTNQWPQ NQIDDGKVIM EKQGQELMQQ QALKCPRCDS SNTKFCYYNN 60 YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GYKRNNKRSN NSTNPLIKRP ISTIDSTTTT 120 ATTSAPSSTL NHISPMFYGL SRLSSSSEYD FHPQMNSSGL GGFSSSGFGH NGFTSNNNNH 180 VSRYDSSIFS FASSSSTSMS VMPSTLLQYN FNNDGLKYSQ DASSNCTFQG LEFASLEHMQ 240 RAISNIGNGS EKMKKVEGQN QIEHVNGLYD PSSFFWNDQG ANIGSSVTSL I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17097

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB087848	2e-75	AB087848.1 Pisum sativum PsDof3 mRNA for DNA binding with one finger 3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003593614.1	4e-82	dof zinc finger protein DOF1.4
Refseq	XP_024631696.1	4e-82	dof zinc finger protein DOF1.4
TrEMBL	A0A2Z6MDZ9	1e-178	A0A2Z6MDZ9_TRISU; Uncharacterized protein
STRING	AES63865	2e-81	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17097