PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17114
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 203aa    MW: 23161.2 Da    PI: 4.0676
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.32.6e-162613896
                      NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd.flvdiv 96
                               m+sae+  l++kace++i elt r+w +++e +r t+k  dia+++ +t+ fd f++ +v
  Tp57577_TGAC_v2_mRNA17114  2 MVSAESQLLMAKACEVLIQELTYRAWFNTKERNRITMKPIDIAKVIMETNPFDdFFMGVV 61
                               9**************************************************963666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-11160IPR009072Histone-fold
PfamPF008082.3E-5247IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.68E-9262IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MMVSAESQLL MAKACEVLIQ ELTYRAWFNT KERNRITMKP IDIAKVIMET NPFDDFFMGV  60
VTQYCASDVK PQVENMENLT VANQQENKTV QPTDIPKAII ENGNELDYEN VEKFLYGDQA  120
FFPPGADFME KPQVENMENL TVANQQENKT VQPTDIPKAI IENGNELDYE NVEKFLYGDQ  180
AFFPPAADFM EKVSIGFNIY RV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3907422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-12nuclear factor Y, subunit C2