PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17135
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 138aa    MW: 16232.4 Da    PI: 7.794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17135genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26064.62.4e-2011110299
                     DUF260   2 CaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                C  Ck lr +C+++  C +  yfp +++ +f+++ +++G +n+++++++++e++r+++++sl++e+  +   P +G +g  + +
  Tp57577_TGAC_v2_mRNA17135  11 CLLCKRLRTTCNNNnnCEFGMYFPPHRNDDFKCALEVYGLTNIIRIMQSVEEDQRQATANSLLFEGFSWRFHPTNGLFGYKSFM 94 
                                999********87666******************************************************************** PP

                     DUF260  84 qqqleqlkaelallke 99 
                                 +q++++  el+ l++
  Tp57577_TGAC_v2_mRNA17135  95 DEQINSSLRELQILNN 110
                                ******9999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.0389112IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-1810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNQQNIDANK CLLCKRLRTT CNNNNNCEFG MYFPPHRNDD FKCALEVYGL TNIIRIMQSV  60
EEDQRQATAN SLLFEGFSWR FHPTNGLFGY KSFMDEQINS SLRELQILNN LLKFCKDHEN  120
SNSQRVRYLV IFNQFFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.18e-12LOB domain-containing protein 9