PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17191

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ZF-HD

Protein Properties

Length: 461aa MW: 51576.5 Da PI: 8.2654

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17191	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.7	3.3e-29	281	335	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAas+Gg+a+DGCgEfm+s ge+ t +alkC C+CHRnFHR+e e+ Tp57577_TGAC_v2_mRNA17191 281 AKYKECLKNHAASIGGNATDGCGEFMSS-GENDTLEALKCCVCNCHRNFHRKEIES 335 68***********************9.8888*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.830.10	1.4E-96	5	260	IPR004183	Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
SuperFamily	SSF53213	3.53E-91	6	260	IPR004183	Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Pfam	PF02900	9.3E-56	6	260	IPR004183	Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
CDD	cd07363	4.96E-129	6	260	No hit	No description
Pfam	PF04770	4.1E-26	281	333	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-28	282	333	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-20	282	343	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.538	283	332	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.7E-24	383	453	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.49E-13	388	453	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.5E-23	392	449	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006725	Biological Process	cellular aromatic compound metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0008198	Molecular Function	ferrous iron binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MALKETFYIS HGSPTLAIDE TIPAWKFLTS WKEVFPHRPS AILVISGHWD TSVPTVNVVN 60 HNETIHDFGG FPRSMYKLKY PAPGAPKLAK RVKELVEASG LSRVDEDKKR GLDHGTWVPL 120 MLMYPEADIP VCQLSVSSNK DGTYHYNLGK ALAPLKDEGV LIIGSGSATH NLRAMAPRGS 180 PTPAWASAFD SWLKESVVEG RYDDINHYEE KAPYAKVAHP WPDHFYPLHV AMGAAGENSK 240 AKVVHESWDG GAFSYASFGF TAASYNSFIE ASKDMEKKLV AKYKECLKNH AASIGGNATD 300 GCGEFMSSGE NDTLEALKCC VCNCHRNFHR KEIESDSQHY AISLIPDHNI NAPFLAHLSP 360 NNKSGSTSPS EQSYYEKDCI KEDENRTEKM IKKRSRTKFS KEQKEKMLCF AEKAEWKIQK 420 LEESVVHKFC LDIGIKRRIL KVWMHNNKNT FAKRNISSTS *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MALKETFYIS HGSPTLAIDE TIPAWKFLTS WKEVFPHRPS AILVISGHWD TSVPTVNVVN  60
HNETIHDFGG FPRSMYKLKY PAPGAPKLAK RVKELVEASG LSRVDEDKKR GLDHGTWVPL  120
MLMYPEADIP VCQLSVSSNK DGTYHYNLGK ALAPLKDEGV LIIGSGSATH NLRAMAPRGS  180
PTPAWASAFD SWLKESVVEG RYDDINHYEE KAPYAKVAHP WPDHFYPLHV AMGAAGENSK  240
AKVVHESWDG GAFSYASFGF TAASYNSFIE ASKDMEKKLV AKYKECLKNH AASIGGNATD  300
GCGEFMSSGE NDTLEALKCC VCNCHRNFHR KEIESDSQHY AISLIPDHNI NAPFLAHLSP  360
NNKSGSTSPS EQSYYEKDCI KEDENRTEKM IKKRSRTKFS KEQKEKMLCF AEKAEWKIQK  420
LEESVVHKFC LDIGIKRRIL KVWMHNNKNT FAKRNISSTS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2pw6_A	1e-46	7	257	18	267	Uncharacterized protein ygiD
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid. Produces mainly (S)-betalamic acid. {ECO:0000269\|PubMed:22270561}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17191

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC139852	0.0	AC139852.18 Medicago truncatula clone mth2-8n13, complete sequence.
GenBank	BT137627	0.0	BT137627.1 Medicago truncatula clone JCVI-FLMt-1P8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633473.1	0.0	uncharacterized protein LOC110630336
Swissprot	Q70FG7	1e-122	DODA_BETVU; 4,5-DOPA dioxygenase extradiol
TrEMBL	A0A2K3MRL5	0.0	A0A2K3MRL5_TRIPR; 4,5-DOPA dioxygenase extradiol-like protein
STRING	AES78584	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	9e-55	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17191

Publications ? help Back to Top
Christinet L,Burdet FX,Zaiko M,Hinz U,Zrÿd JP Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora. Plant Physiol., 2004. 134(1): p. 265-74 [PMID:14730069] Gandía-Herrero F,García-Carmona F Characterization of recombinant Beta vulgaris 4,5-DOPA-extradiol-dioxygenase active in the biosynthesis of betalains. Planta, 2012. 236(1): p. 91-100 [PMID:22270561]