PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17244
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 473aa    MW: 53940.3 Da    PI: 9.6848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17244genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-07450469626
                                -SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                                Cr+far G C++Gd+CkF Hg
  Tp57577_TGAC_v2_mRNA17244 450 CRHFAR-GRCHFGDNCKFLHG 469
                                ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689062.93E-6112151No hitNo description
Gene3DG3DSA:1.10.720.306.9E-8117153IPR003034SAP domain
PROSITE profilePS508009.706117151IPR003034SAP domain
PfamPF020371.6E-9117150IPR003034SAP domain
PROSITE profilePS5010315.535444471IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6445469IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016445470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-7446469IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEFHEIIIES EGSNPNSEWD DSEEDPDYDM LEETHRSFSN LSLKNKSKKR IVENMGMVTA  60
ISSEMLELNT PSVDGDSFEK VQKIIKAMHA VDFCNLKLNM FKVSLIVFGL HFAAGLLEKL  120
KVDECKIYLK KNGLRLTGNK DTLIQRIKEH QEIINGGGEK KYPPHSFVLN CKGDACTGDV  180
VLFEQNVYEM FNIASRSGGG PPCGKRTVAG RIVKESYGAA KQQHTFTIEV LWSKGEKPLP  240
PLHPLLIKGR NLYRLKTLRQ KWEDEGQRQK LLMEKHSRGS VARADREARI QEKEMRKSMK  300
ENRISKKDSA KNQSQSHSSI VRPQIQPQET TNVLIIPPSA IVNKPAAVTE QPVRSIDSRA  360
VTMGSDQFRN SGKPSFNSNH YYADYNYRDK PTTVERYHPS MVETNNFAER TFYPRKPLSS  420
ANHFVPRFAN ANHIHTVIPN RESYQQKQFC RHFARGRCHF GDNCKFLHGG RD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17244
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520571e-61AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627367.20.0zinc finger CCCH domain-containing protein 62
TrEMBLA0A2K3P5710.0A0A2K3P571_TRIPR; Zinc finger CCCH domain-containing protein 62-like
STRINGXP_004510536.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224