PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17258
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 339aa    MW: 37507.8 Da    PI: 4.769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17258genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1975124255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Tp57577_TGAC_v2_mRNA17258  75 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 124
                                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.09275132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3275134IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2275134IPR016177DNA-binding domain
SMARTSM003803.3E-3775138IPR001471AP2/ERF domain
CDDcd000181.36E-3275133No hitNo description
PfamPF008477.2E-1276124IPR001471AP2/ERF domain
PRINTSPR003679.3E-127687IPR001471AP2/ERF domain
PRINTSPR003679.3E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
LTXXXXXXXX XXXXXXDEDE DDDEGLLVGV KGFTFAASNN KSSRNFSRGS AGAKSVASKS  60
NEQAEKESKR KRKNQYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDAEAR  120
RIRGKKAKVN FPDEAPNASS KRLKTNPDNQ LLNKNLNSFK PKGNNKMFNF SENMENFYSP  180
MDQVEQKPLV NNQYGAADIG AFAGNGVHLA PADVNAYFSS EHSSNSFDYS DLCWGEQGPK  240
TPEISSVFSA PLEAEPQMNM QSNNSQDMLP MQAESAKTLS EELADIESQL KFFENSFDDN  300
WSDASLASLL GADVTQDAGN TMNLWSFDDL PSIAGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-21741341374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2367540.0AB236754.1 Trifolium pratense RNA for putative transcription factor EREBP, complete cds, clone: C1500.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627419.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLQ2PEZ60.0Q2PEZ6_TRIPR; Putative transcription factor EREBP
STRINGAET018950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-51related to AP2 2