PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA17274

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WRKY

Protein Properties

Length: 231aa MW: 25300.2 Da PI: 8.026

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA17274	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.1e-31	93	151	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY Ct agC+v+k++er+++d k v++tYeg+Hnh+ Tp57577_TGAC_v2_mRNA17274 93 LDDGYRWRKYGQKVVKGNPNPRSYYNCTKAGCTVRKHMERASHDLKSVITTYEGKHNHD 151 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-33	84	153	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-27	87	153	IPR003657	WRKY domain
PROSITE profile	PS50811	37.149	88	153	IPR003657	WRKY domain
SMART	SM00774	5.5E-33	93	152	IPR003657	WRKY domain
Pfam	PF03106	5.0E-24	94	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MTKSTSRGGL VERIARTGFN APRLNTESIR STELSLNSEI QFPYWTIQPD AVDGSSTFSN 60 EWEDDKATNG SVSLAYDVEG DESESTRSEV DILDDGYRWR KYGQKVVKGN PNPRSYYNCT 120 KAGCTVRKHM ERASHDLKSV ITTYEGKHNH DVPAARSSSH VNANASNAGQ GQASGLLQNH 180 VHRNEPSQIH NGIGRPSFGS FNLPGRQQLA DLGHPHGXXX XXXGRTKCGC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-36	80	154	4	78	Probable WRKY transcription factor 4
2lex_A	7e-36	80	154	4	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SI37}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA17274

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142227	8e-77	BT142227.1 Medicago truncatula clone JCVI-FLMt-22I14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458833.1	4e-89	probable WRKY transcription factor 2
Refseq	XP_024633691.1	4e-89	probable WRKY transcription factor 2
Swissprot	O65590	4e-45	WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBL	A0A2U8UG52	6e-97	A0A2U8UG52_TRIRP; Putative WRKY transcription factor 2 (Fragment)
STRING	XP_004499679.1	1e-87	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	9e-43	WRKY DNA-binding protein 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA17274

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Hu X, et al. Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization. Plant Cell, 2014. 26(12): p. 4763-81 [PMID:25538183] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]