PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17350
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 122aa    MW: 14054.3 Da    PI: 9.2422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17350genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.6e-312473150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  Tp57577_TGAC_v2_mRNA17350 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 73
                               79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.1931676IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-391675IPR002100Transcription factor, MADS-box
CDDcd002658.50E-391778No hitNo description
SuperFamilySSF554556.8E-301778IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-331838IPR002100Transcription factor, MADS-box
PfamPF003195.8E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-335374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MELPNESGEG SAQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VVFSTRGRLY EYANNRFDFT LFLTFKSSRS CYLFNFIYSQ QILRILSLSY CLLLIENENT  120
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-211682167Myocyte-specific enhancer factor 2B
1tqe_Q8e-211682167Myocyte-specific enhancer factor 2B
1tqe_R8e-211682167Myocyte-specific enhancer factor 2B
1tqe_S8e-211682167Myocyte-specific enhancer factor 2B
6c9l_A8e-211682167Myocyte-specific enhancer factor 2B
6c9l_B8e-211682167Myocyte-specific enhancer factor 2B
6c9l_C8e-211682167Myocyte-specific enhancer factor 2B
6c9l_D8e-211682167Myocyte-specific enhancer factor 2B
6c9l_E8e-211682167Myocyte-specific enhancer factor 2B
6c9l_F8e-211682167Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2975662e-85JX297566.1 Medicago monspeliaca voucher PI 641560 shatterproof mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636027.16e-46agamous-like MADS-box protein AGL1
SwissprotQ408721e-39AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLR9R6D79e-45R9R6D7_9FABA; Shatterproof
TrEMBLR9R6G79e-45R9R6G7_9FABA; Shatterproof
TrEMBLR9R6H89e-45R9R6H8_9FABA; Shatterproof
STRINGXP_004513719.11e-43(Cicer arietinum)
STRINGXP_007146364.13e-45(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.24e-42MIKC_MADS family protein