PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA17387
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 140aa    MW: 16333.1 Da    PI: 4.4783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA17387genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-081965347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                W+ e+ +++ +a  + + +   +W++Ia++++  +++ ++k+++q++
  Tp57577_TGAC_v2_mRNA17387 19 QWSREDGKIFERALLMVPENspnRWEKIAEKVP-DKSAAEVKDYYQDL 65
                               6*****************99*************.************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.82E-101565IPR009057Homeodomain-like
SMARTSM007171.3E-71668IPR001005SANT/Myb domain
PfamPF002495.6E-71965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-51965IPR009057Homeodomain-like
CDDcd001673.82E-52065No hitNo description
PROSITE profilePS500906.332066IPR017877Myb-like domain
PROSITE profilePS500904.87995123IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MYQNTIDMAT TVTTRSPTQW SREDGKIFER ALLMVPENSP NRWEKIAEKV PDKSAAEVKD  60
YYQDLDHEIS EIEAGRVEIP IYPDDLAESG GSGSSDSEKE TPWTKEEQRL FLAELEKYEK  120
EDWFQKRFKI LSWDKNTHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA17387
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470249.11e-36transcription factor DIVARICATA
TrEMBLA0A2K3KNZ39e-50A0A2K3KNZ3_TRIPR; Transcription factor DIVARICATA-like protein (Fragment)
STRINGAES843684e-36(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-26MYB family protein